rs38065833 SNP Detail

Summary

• ID
  rs38065833
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128812552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCATTT GGTATACGCA
  AATATTTAGA TAGCAAAAAT GATCCAAAAA ATCTCAGACA GATGCCAAAC ATGCTAAAGA
  AGACATATCC ACTTCCCTTT ATTTATTTAT TTAGCTAACT CAACACTACA AGCCAGGAGC
  CATCTTGATT CTCAGGTTGT CAGGTTCCTG CTACAGCGAG CTTGCCATCT GTGGAAAGGT
  M
  ACTTTGTCGT ATATCCCATA TATCCTGCGG CTAGAACGAG GTGAGGGGCT CTGCTTTGTT
  TTATAATGCC CCCCCCCTTT TTTTTTTACT GGTGTGTTGA TTCCATGAGG AAATAGGATG
  TTAAGACCAA TTAACTCAGG GTGGACCTGC ATAGCTGCTT ATGGATCACG TGAAACTGCT
  TGGACCAGAG ACTCGCACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843727	NES14705136	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38065833					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843727	NES14705136	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128812552 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	within coordinates
Cpgi16665	CpG island 16665	360 bp proximal
Gm71554	predicted gene, 71554	within coordinates
Piwil1	piwi-like RNA-mediated gene silencing 1	583 bp upstream
Rr621172	regulatory region 621172	1172 bp distal
Rr621173	regulatory region 621173	1292 bp distal
Tssr1644	transcription start site region 1644	672 bp upstream
Tssr48983	transcription start site region 48983	598 bp upstream
Tssr48984	transcription start site region 48984	637 bp upstream
Tssr48985	transcription start site region 48985	680 bp upstream
Tssr48986	transcription start site region 48986	754 bp upstream
Tssr53471	transcription start site region 53471	523 bp downstream