rs38066827 SNP Detail

Summary

• ID
  rs38066827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83904668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATCTGT GGTACTGGGG
  AAGGCGTGAA CGCCAGCACC TGCTAACCTT GACCTCAATC TGCCTGCAGA ATAGATGAAA
  GCCCTGCATG TTCACACCTC CCTTCTCCAG GTCTCCACTC TCACAAAAAC CAAGTGAGAA
  TGTGTCTTGC TCAACAAAAG TTCACTGGAT TTGTGCCCAC TGGGTTATAA AATGTGTTCC
  Y
  ATAATAAACT CAGAAAACTA GTAAACAAAT CACATGGAGG GCACACCACT CAAGACGGAC
  CAATCTTCAA GCCACAGAAA ACACAATACC TAAGACTTAC CAATGTAAAG ATTTTAAAAG
  CAGCTAATCA CAGGCTACTT AAGAAAGACA CTTTAGGAAA TTCAGTAACT CTGCTAGGTC
  ATCCCAGGAA CTAACCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51569483	NES14674992	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38066827					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569483	NES14674992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83904668 () rs orientation: forward

Symbol	Name	Function Class
Rr578948	regulatory region 578948	1656 bp distal
Rr578949	regulatory region 578949	888 bp distal
Rr578950	regulatory region 578950	within coordinates
Tmem131l	transmembrane 131 like	Intron