rs38067454 SNP Detail

Summary

• ID
  rs38067454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74025845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACCTATC CACTCACCCA
  CTCATCCACC CATCCTCCAC CCACCCATCC ACTCATCCAC CCACTCACAT ATCCACTCAC
  CCAGTCACCC ACCCATCCTC CCCATCCATC CATCCATCCA TCCATCCATC CATCCACCCA
  CATATTTATC TACCCCTCTA TACATTCATT ATTTATCCAT TCTTTCTTTA AGAACACCAC
  Y
  GTAGGCTACC ATCTACCCCC ATACACATGA CACATGCACC CACCCAGGCC ACATGATAGT
  TAAGTTTTTC CAGCCAGGGC ATGCCTCCAA ACTTGCTGAG CCCCAGGATG AAAATGAAAA
  AAAAAAAAAA AAAATCTGCA AATTTCAGAG CCTGGAACTC ACTTGGCGTT CTCTAGCACC
  CTCTCGTGGT GAACATGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276048	NES14516345	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38067454					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276048	NES14516345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74025845 () rs orientation: forward

Symbol	Name	Function Class
Rr17340	regulatory region 17340	1845 bp distal
Rr17341	regulatory region 17341	within coordinates
Rr27623	regulatory region 27623	within coordinates
Rr34548	regulatory region 34548	524 bp proximal
Tns1	tensin 1	within coordinates
Tssr12229	transcription start site region 12229	108 bp downstream