rs38071914 SNP Detail

Summary

• ID
  rs38071914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97596729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTCCT CTTCCTCTTC
  CTCTTCCTCC TCCTCCCTCC TCCTCCTCTT CTCTAGTAGC AAATGGTGCT TTTCAATCAG
  CAGATTGTTT GGGCAACTTC AGCCAGTCTC CCTAAACTAG TCACTGCCTG CACCAAGCTG
  GTTTAAGCTG CAGAGAAGCA TTTCTGTCAG CTGCTCTGTC TCAGTGGAGC CTGTAATTGT
  R
  AAGACTGAAC TTCAGGGTTG TTGAAATGGA CCACTGTTCC TTGGTTTGTA AACACGTTCC
  CCTCCTCACT ATCAGAGATG TGTTCACACC TAACTTCCTT AAGAAGAACT GCAGTTTTTA
  TCTCCTACTG TGGCTGTCCT ATGGCCTATC TTCTTTCTGT GGGTGGTGCC TTTCCCACCA
  ACACACACTT GTGCCTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50996650	NES13919747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38071914					SNP	G	G	G	G	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996650	NES13919747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97596729 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	1380 bp upstream
Mir7225	microRNA 7225	1096 bp downstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	415 bp downstream
Tssr30803	transcription start site region 30803	1416 bp upstream