rs38073100 SNP Detail

Summary

• ID
  rs38073100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154197794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTCTAGAA GACAGGATCT GGTAGATGGA ATCACTCAAA
  ACCTTCAGTG GTAAAACCAT CGCCTAGGGG TCGGGGACAA AAATAATTAA AGACTATTAC
  Y
  TGGAGGTCTG GGAGAACCCA ACAGATTTGG AATGGCCAGA TATGTAGAGG ACAGGGTTTC
  TGCTTCATCA GGCAGTTCTT CCCCTTTTAC TCTACATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51391818	NES14463967	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	C	T	T	T	T	T	T	C
ss145760241	ENSMUSSNP2245985	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38073100					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51391818	NES14463967	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154197794 () rs orientation: forward

Symbol	Name	Function Class
Gm18727	predicted gene, 18727	1008 bp downstream