rs38073851 SNP Detail

Summary

• ID
  rs38073851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCGGAAAC TAGAAGGATG
  CCGCTTGTGC ATTCTGGCTC ACTAGCCGAC ATCCCGGTCC CCCGCCGTCA CATGCTGTTA
  TTGAACTTGG GAAATATCCC AGTCCGGAGT GCACAAGCCT CTTCCAGACC CACCTCCCGG
  CCGTAGCCGG GTCACAGGAA AGCCCAGCGT CGTTGTGATC CGGGATTTTC CAATTTTCCC
  R
  GAGGATTCGC ATCCGGTTGC TGGGAGAGGC TCCGTGGGGG GTCCGCGGCC AGGGAGGGGA
  GTGGGGCCGG GGTGGGGATA AGAAGTGGAG GGTGGGCAGA GCGAGAATCG CCAACGCTGG
  AAAGCGCTGA GCTTGCCTGA CGCTCTCCTC TCCGTACTTG GTTGCCCCCA CTCTCTCTGA
  AAGATTGGGA ACCAGAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618305	NES14659880	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	G	A	A	A		A	A	A	G		A
ss135871380	ENSMUSSNP1036158	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320956930	CHEV_3_127493627	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38073851					SNP	G	G	G	A	G	A	G	G	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618305	NES14659880	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	581 bp distal
Cpgi13801	CpG island 13801	within coordinates
Gm56817	predicted gene, 56817	452 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	787 bp distal
Rr584861	regulatory region 584861	890 bp distal
Rr584862	regulatory region 584862	463 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	106 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1507 bp downstream
Tssr31595	transcription start site region 31595	1495 bp downstream
Tssr31596	transcription start site region 31596	1462 bp downstream
Tssr31597	transcription start site region 31597	1422 bp downstream
Tssr31598	transcription start site region 31598	1399 bp downstream
Tssr31599	transcription start site region 31599	900 bp downstream
Tssr31600	transcription start site region 31600	832 bp downstream
Tssr31601	transcription start site region 31601	780 bp downstream
Tssr31602	transcription start site region 31602	726 bp downstream
Tssr31603	transcription start site region 31603	708 bp downstream
Tssr31604	transcription start site region 31604	584 bp downstream
Tssr31605	transcription start site region 31605	70 bp downstream
Tssr31606	transcription start site region 31606	91 bp upstream
Tssr31607	transcription start site region 31607	329 bp upstream
Tssr31608	transcription start site region 31608	397 bp upstream
Tssr31609	transcription start site region 31609	448 bp upstream
Tssr31610	transcription start site region 31610	557 bp upstream
Tssr31611	transcription start site region 31611	665 bp upstream
Tssr35598	transcription start site region 35598	951 bp upstream
Tssr35599	transcription start site region 35599	869 bp upstream
Tssr35600	transcription start site region 35600	841 bp upstream
Tssr35601	transcription start site region 35601	808 bp upstream
Tssr35602	transcription start site region 35602	491 bp upstream