rs38074276 SNP Detail

Summary

• ID
  rs38074276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:19279716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGGAGC TTCTTTGACA
  CCCCAGCTGA TATATTTTAA GCTATTTACT CGTAGATTTC TGATCGGGTT TCTGAGGTTT
  CTTTAAGTTT TCTAAGGCTG GCTCTGGGAG ACTTTGCTCT CCAGAAAGGG AACTTTTAAG
  GTTGGAATGT GAGAAGTTTA ATTTAGGAGC TATTTTCTTT TCCTTTTTGT TTTTCTTTCT
  Y
  TCCGGCTCTC TCCTTCCCCT TGTAGACTCT GGTAGGTAAC GTGGAGCCAG GAATTCAGGC
  AAACAGTGAG GGAAAAACAG TCTCTCCTCA TTTTGAGTAC GGGACAGAAT CGGGTTTTTA
  AGCCTCACGC CGACTGGGAC TTTAATTTTT GCTTTTTAAA CTTTTAATAT TTTTTTTTAA
  ATCGGTAACC AACGTACGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916968	NES13479763	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38074276					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916968	NES13479763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19279716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi65	CpG island 65			189 bp proximal
Rr408237	regulatory region 408237			1602 bp distal
Rr408238	regulatory region 408238			522 bp distal
Rr408239	regulatory region 408239			within coordinates
Tfap2b	transcription factor AP-2 beta			Intron
				mRNA-UTR
Tssr6030	transcription start site region 6030			525 bp downstream
Tssr6031	transcription start site region 6031			498 bp downstream
Tssr6032	transcription start site region 6032			481 bp downstream
Tssr6033	transcription start site region 6033			459 bp downstream
Tssr6034	transcription start site region 6034			439 bp downstream
Tssr6035	transcription start site region 6035			403 bp downstream
Tssr6036	transcription start site region 6036			391 bp downstream
Tssr6037	transcription start site region 6037			366 bp downstream
Tssr6038	transcription start site region 6038			339 bp downstream
Tssr6039	transcription start site region 6039			315 bp downstream