rs38075023 SNP Detail

Summary

• ID
  rs38075023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60726461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATACTAG CAAGATTTTG
  CTGAAAGGAC CCAGATAGAG CTCTCTCTTG TGAGACTATG CCGGGGCCTA GCAAACACAG
  AAGTGGATGC TCACAGTCAG CTATTGGATG GATCACAGGG CCCCCAATGG AGGAGCTAGA
  GAAAGTACCC AAGGAGCTAA AGGGGTCTGC AACCCTATAG GTGGAACTGC CTGCCGCTGA
  Y
  TCCATGCAGA TCAGTAGACT CTGAAGGGAA CACCCCAGCG CAGCTATGAA GCACGTCTCA
  GCTGAACATT TATTATAAGA AGCACACTAT GTGCACCACT CAGAAGGATA ATCTAGTGCT
  TTTCAAGGAT ATGTGTTTAG ATTCCTGCAC TCTTAGAGAT TCTTCTCTGC AGGACACAGC
  TTGGTCCAGT TATTGTATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50715211	NES14255705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38075023					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50715211	NES14255705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60726461 () rs orientation: forward

Symbol	Name	Function Class
Rr383461	regulatory region 383461	1741 bp upstream
Rr680366	regulatory region 680366	1293 bp distal
Rr680367	regulatory region 680367	303 bp proximal
Rr680368	regulatory region 680368	387 bp proximal
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates