rs38076240 SNP Detail

Summary

• ID
  rs38076240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCTTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCCCTCC CTCCCTCCCT CCCTCCCTCT CCCTCTCCCT CGCTCTCGCT CTCTCTCTCC
  W
  TGGCTTGGTT TACAGGCAGT CTTGCACTAT ATACTAAGGA AAGGTTGAAA AAATATATAG
  CCAGCGCGAT CTTAAGCTTA TGAAATACGT GATCTTTATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51618320	NES14659875	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38076240					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618320	NES14659875	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	193 bp distal
Cpgi13801	CpG island 13801	317 bp proximal
Gm56817	predicted gene, 56817	64 bp upstream
Gm65225	predicted gene, 65225	72 bp downstream
Rr584860	regulatory region 584860	399 bp distal
Rr584861	regulatory region 584861	502 bp distal
Rr584862	regulatory region 584862	75 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	494 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1119 bp downstream
Tssr31595	transcription start site region 31595	1107 bp downstream
Tssr31596	transcription start site region 31596	1074 bp downstream
Tssr31597	transcription start site region 31597	1034 bp downstream
Tssr31598	transcription start site region 31598	1011 bp downstream
Tssr31599	transcription start site region 31599	512 bp downstream
Tssr31600	transcription start site region 31600	444 bp downstream
Tssr31601	transcription start site region 31601	392 bp downstream
Tssr31602	transcription start site region 31602	338 bp downstream
Tssr31603	transcription start site region 31603	320 bp downstream
Tssr31604	transcription start site region 31604	196 bp downstream
Tssr31605	transcription start site region 31605	281 bp upstream
Tssr31606	transcription start site region 31606	479 bp upstream
Tssr31607	transcription start site region 31607	717 bp upstream
Tssr31608	transcription start site region 31608	785 bp upstream
Tssr31609	transcription start site region 31609	836 bp upstream
Tssr31610	transcription start site region 31610	945 bp upstream
Tssr31611	transcription start site region 31611	1053 bp upstream
Tssr35598	transcription start site region 35598	563 bp upstream
Tssr35599	transcription start site region 35599	481 bp upstream
Tssr35600	transcription start site region 35600	453 bp upstream
Tssr35601	transcription start site region 35601	420 bp upstream
Tssr35602	transcription start site region 35602	103 bp upstream