rs38078036 SNP Detail

Summary

• ID
  rs38078036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34922785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCGGAGGT TTCACAGCAG CTCTGATGCG GGGGACCAGT
  TTCTCAGGGC AGGCCTGCGC AGCAGGGCGT CAGTCTTCAG CCACGCCCTT AGGATGGTCA
  R
  TCATTGGCAG GAGCAGTGCA ATAGGAACGA GCGTGGGCGA CCCCGTGTCA CTGTTTCAGT
  TTGTCCTGTT CAGTTGGTTG AGTGAGCGAC AGAGAGCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50525765	NES14089092	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	A	A		A	A	A		G
ss149109260	ENSMUSSNP4247212	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322578192	CHEV_8_35518685	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38078036					SNP	G	G	G	G	G	A	G	G	G	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50525765	NES14089092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34922785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	within coordinates
Gm39159	predicted gene, 39159	within coordinates
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	1287 bp upstream
Rr400818	regulatory region 400818	2 bp downstream