rs38079520 SNP Detail

Summary

• ID
  rs38079520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95974879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTAAAAC ATAGCTGGCC
  TGTTGGCTGA AAAGAGATCA AAGCCATTAG AGATAGCCAC CTTAGAAAGG AGCTGCCCCA
  GGTCAGAGGA AACAGGACAC TGGGCACATT ATGCAGGACG GGGCCTTTGA CTTGATCCAG
  GAAGGAAAAG GAAGCTACCA GACACTCCAC ACAATCTGAA CATGGATTAC TGTTGAGAGC
  R
  CAGTACAGTT TCTGTAGCAA ACACCCTCAT ATTCACAATG GTCTTACAAC GATAGGAGAG
  CCCCTCCTTC TCCCAGTCAC TGCTCAGAAC CTGAAAAGAA AACAAACAAA GGGAATCTGT
  ACCTGGCCTT CTTCCGAAGT AACTTCTGAG ATTCCGGGTA ATGCACTAAA ATTTCATTCA
  AGTCCTTCTT GTCCAGTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51973412	NES14990754	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G		A	A	G	A
ss145641452	ENSMUSSNP4153854	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38079520					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973412	NES14990754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95974879 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	within coordinates
Rr368591	regulatory region 368591	645 bp downstream
Rr668198	regulatory region 668198	547 bp distal
Rr668199	regulatory region 668199	1586 bp proximal
Rr668200	regulatory region 668200	1791 bp proximal