rs38080357 SNP Detail

Summary

• ID
  rs38080357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32572998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGTCAA TATGCACTAG
  ACTATGTCCA GTCTTCAATG TCTCTCATGA AGGCATCATT TCTGCCTTAT CATTTTGATC
  TTGCAAATCC ACATGAAGCT TTGCAGTTAT GAACTTGCAT TTGTCCCGAA TCCCGGTCTT
  TCTAGCAAAT TCTTTTAAAG CAGAAGCTCC GGCTGTTGGG TCTCTAAACC TAACTAGGTG
  Y
  CCTGTGCAGA ACTGAGTCAA GACCGGCAGA ATTGTGTCCC GTTAGCATGC TAAACGTGAC
  CCCAAAGTGC CTTCAAAGCA GTTCTCAGCT GTTTCTGTGG CCCACAGAGG AATGCTTCCT
  CCTCCAGGTC TGAGAAGGAC TGGGCATGGT GGCCTGCTGT CCCAGCACTC AGGAGGCTGA
  GAACAGGCAG GAAAATCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51692633	NES14756039	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T		T	T	T
ss148200795	ENSMUSSNP990847	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38080357					SNP	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51692633	NES14756039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32572998 () rs orientation: forward

Symbol	Name	Function Class
Rr609356	regulatory region 609356	1732 bp distal
Rr609357	regulatory region 609357	705 bp distal
Rr609358	regulatory region 609358	978 bp proximal