rs38082600 SNP Detail

Summary

• ID
  rs38082600
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACCCA TAGCTTTCAT
  GAGATTTTCT AAAAGGTTCT TCACCCCAAA AGAGCTAGCT TTAAGACAAC TGTGAGGTCC
  TAGTGGTACA AGCCTGTAAT CACAAGTTCA AGGCCAGTGT AGGCAACTTA TCTGGACTTT
  GTCATTAAAA AAAAAAGTTT TGTTTTGTTT TTTAATAAAA AAGAAACGGC TGTTGTGATA
  K
  ATCCCTGTCC TTGTGTGTGC AAAGCCTTCA ATAATGAAAA AAAGCTGTAT AACTTCTTTG
  ATTCATTTAT TTTGGTTGTT TTGTTTAGAT AGGGTCTTGC TGTATGGCTC AGCCTGACCT
  GGAACTCATA AGCAGTTGGA GCAATCCTAA TTCAATCCTC TTGAGTGCTG CGATTACTGG
  TTTATTCTGA ATTTTCTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842530	NES14762358	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38082600					SNP	T	T	T	T	T	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842530	NES14762358	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282534 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1564 bp upstream
Cpgi17838	CpG island 17838	743 bp proximal
Cpne9	copine family member IX	2 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	52 bp downstream
Gm67816	predicted gene, 67816	48 bp downstream
Rr399829	regulatory region 399829	799 bp upstream
Rr636483	regulatory region 636483	within coordinates
Rr636484	regulatory region 636484	1074 bp proximal
Rr636485	regulatory region 636485	1867 bp proximal
Tssr58189	transcription start site region 58189	1377 bp upstream
Tssr58190	transcription start site region 58190	1587 bp upstream
Tssr58191	transcription start site region 58191	1666 bp upstream