rs38082730 SNP Detail

Summary

• ID
  rs38082730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110227548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCCAG GAAGAGCGCT
  GCCAAGCGGC TCCCCGTCCT GCCGCCACCC TTCGCGTGCT GACGGGATCG TGCTGCTGGC
  CCGGTTGCTC ACACTCGGTG TCTTGTTCCT TTCCAGGGTA TCAGAGCATC GCCACAGAAT
  GAAGCTGGTT TCCATCACCC TGATGTTATT GGGTTCACTC GCTTTCCTAG GCGCGGACAC
  Y
  GCAGGGCCAG ATACTCCTTC GCAGTTCCGA AAGAAGTGAG TTTGGGCCGT GCTTTCTTTC
  TTCACTTTGA ATACCTGGCA ATGAGAGAAA ACTGAGAGAT GGTCTGGAGG TGTTACAAAG
  GGAGTGGAGC TGGCTGGGAC ATCACTTGAA CTTAGGCCAA ACGCATCTGC TTGTGTTTTC
  TAGGTGGAAT AAGTGGGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50455971	NES14118592	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	C	T	C		T
ss322397529	CHEV_7_117771855	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38082730					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455971	NES14118592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110227548 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	within coordinates
Cpgi19575	CpG island 19575	1728 bp distal
Cpgi19576	CpG island 19576	551 bp distal
Cpgi19577	CpG island 19577	within coordinates
Cpgi19578	CpG island 19578	1964 bp proximal
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	within coordinates
Rr400547	regulatory region 400547	1866 bp upstream
Rr653266	regulatory region 653266	1535 bp distal
Rr653267	regulatory region 653267	1434 bp distal
Rr653268	regulatory region 653268	774 bp distal
Rr653269	regulatory region 653269	1105 bp distal
Rr653270	regulatory region 653270	670 bp distal
Rr653271	regulatory region 653271	1304 bp proximal
Rr653272	regulatory region 653272	1871 bp proximal
Tssr68500	transcription start site region 68500	675 bp downstream
Tssr68501	transcription start site region 68501	193 bp upstream
Tssr68502	transcription start site region 68502	1185 bp upstream