rs38085305 SNP Detail

Summary

• ID
  rs38085305
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:74604621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTGATGT ACAAGGGACA CCTATGGCAT CTTGAATTGG
  TCTGTGGGAG GATTTGTATG TTATATAGAA TGTAAAACAC AAGTTGTAAG ACAGCTTTAC
  M
  AGGACTTCCA GAAAAACTTC AGGGGCCTCC CATGATGAGG GGAGAGGGGG AAGGGTGGGG
  GCTAATGGCC TGGACAGAAA GTCTCTTGGC AGAAATGGTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51714864	NES14563500	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs38085305					SNP	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51714864	NES14563500	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74604621 () rs orientation: forward

Symbol	Name	Function Class
Lypd2	Ly6/Plaur domain containing 2	Intron
Rr504340	regulatory region 504340	1977 bp distal
Tssr134735	transcription start site region 134735	1520 bp downstream
Tssr134736	transcription start site region 134736	1542 bp downstream
Tssr134737	transcription start site region 134737	1586 bp downstream
Tssr134738	transcription start site region 134738	1988 bp downstream