rs38085671 SNP Detail

Summary

• ID
  rs38085671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61121235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTCAGT GGAATAAATA
  GCTACAAATT TATGTGAGTC CGTGTCTTCC TGAATTGGTC AAGGCACAGA GCCCCAGGAA
  CTGGCATTTT GCTTTGGCTT GTTTTTTGGG TTTTTTGTTT GTTTGTTTGT TTTTGTTTGT
  TTCAAATCTC CCCTGTTGCA AAATAAAAGT CCTGGTCCTA TGGATTGGAA TAACTTGGAT
  Y
  ACATGCTTAA AGGCTGAGCC AGTCGTGAGA TTGTCTGGAC CACAAGCTTG CACCCTTAGG
  ACTAAGGATG GAGTCTGGGT TTTTTTTTTT TTCTTCTTTC TTTCAGGCAT TTGGGTACCC
  TTAACAAGAA TTGTTGGGGG GTGGAGTGCC ACAAAGAGCC AAGAACTCAA GCCTCTCTGT
  GGAGCCTTCA GGGTCTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50415280	NES13457185	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38085671					SNP	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50415280	NES13457185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61121235 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	11 bp downstream
Rr538733	regulatory region 538733	308 bp distal
Rr538734	regulatory region 538734	864 bp proximal
Rr538735	regulatory region 538735	1131 bp proximal
Rr538736	regulatory region 538736	1553 bp proximal
Tssr151389	transcription start site region 151389	615 bp downstream
Tssr151390	transcription start site region 151390	378 bp downstream
Tssr151391	transcription start site region 151391	226 bp downstream