rs38087272 SNP Detail

Summary

• ID
  rs38087272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131564970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG GGCAGGACTG TCACCTGGGA
  Y
  GCTGTCACTG GGGTGCTGTC ACCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51366994	NES14473865	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	C	T		T	T	T		C
ss319974763	CHEV_1_133533809	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs38087272					SNP	C	T	C	T	C	T	C	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366994	NES14473865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131564970 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	1082 bp upstream
Rr12195	regulatory region 12195	231 bp proximal
Rr28482	regulatory region 28482	630 bp proximal
Rr366988	regulatory region 366988	982 bp upstream
Tssr8635	transcription start site region 8635	1038 bp upstream
Tssr8636	transcription start site region 8636	1074 bp upstream
Tssr8637	transcription start site region 8637	1122 bp upstream
Tssr8638	transcription start site region 8638	1156 bp upstream
Tssr8639	transcription start site region 8639	1208 bp upstream
Tssr8640	transcription start site region 8640	1253 bp upstream