rs38090610 SNP Detail

Summary

• ID
  rs38090610
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103961156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGTGAA GAATACGGGT
  CAGATTTACA GCAGACAGCC CTGAAGCTAG CACTGTGTGA GGCCATGTGA GGCTCGTATT
  TTCCAAAGTA GCCCTTTAAG CGTTCAAGCT TAGTGGTCAG AACAATTCTA CCTTTGCTCC
  ATAAAAGCAA AGATAGCCCA CGCGGCTAAG GGTCCAGCCC AGCAGGAGAG CAATTGCCTG
  S
  TGTTGGAAAG ACTCTGAATT TGCTCCCTCG AGCTGCTGAG GGCTAAGGGA TCCAAACTGA
  ACAATAAGCC CAAGGCTCCC AGATATGGCA GCTCCTCCTA AGGATATTTT GGATATCTGG
  GGAGACCTTG CCTTATTTTA AGAGATATGT ACTAATGACT TTGGACACCT TTGTAACCTT
  CTCTTTTTTT TTCTTTTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50790721	NES14206955	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38090610					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50790721	NES14206955	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103961156 () rs orientation: forward

Symbol	Name	Function Class
Acad11	acyl-Coenzyme A dehydrogenase family, member 11	within coordinates
Rr383851	regulatory region 383851	within coordinates