rs38091475 SNP Detail

Summary

• ID
  rs38091475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33961821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAATCT TCCTAAAAAA
  CCTGTGTTAA GTATATATGG TATTATATAC TGGTTTGTGT TTTAAGCAGT TCCTCTTTTA
  GCTGATAATT GTCATTCAGT TCCAATGCCT GGATTTGTGT GGTGTTTGTA GTCACATTTG
  TGCCCAGGGG TATTACATGG TGACCTTATG AGAAATGATG AGGGACAGTT TTTATGCATA
  Y
  CATACACATC TGTGCTAGGT GAGGGCCCAG TGCTGTGCTT TGCTGAGTAA AATGTTCACA
  TAGATTTAAA CATTTGTTGA GAGAACTGAA TGAAGAACAT CAGAAATATC AAAATAAATT
  TAACATGCCA CTTACTGCTC TTACCTTTAA AATACTTGGA ATTGTTAAAA GCACAACTTC
  TTACAGAGTT AATGATACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50942620	NES13471465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38091475					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942620	NES13471465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33961821 () rs orientation: forward

Symbol	Name	Function Class
Dst	dystonin	within coordinates
Gm37354	predicted gene, 37354	within coordinates
Tssr6161	transcription start site region 6161	264 bp downstream