rs38092814 SNP Detail

Summary

• ID
  rs38092814
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92090571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGCCCAG CTTTAGGTAG
  CCAGTGCCTT TGTTTTTATA TCTATGTGTA TCCATGGAGA CCTCTGGAAG TCTCTTTTAA
  TAATCCTTTT TAGCTAGGTC CCCTTTATGG ATTTTGTGAG TTTAGATGGA TATTTGTGAT
  TATTATTAGT GAGATAAGCC CATTCATTTG AACTCCTACT GCCAAGAAGT ACCACGTGGC
  K
  TTTTGAGTCA GACCTCCCAG AGTAGAGCTG ATGTAGCTGA GGCCCTCAGA GTTCATCGGC
  TGCTTTAGAT TCCACAGTGA CTAATTACAG AGTAGAATCT ATAATTTAGA ATTACATGTT
  CAGAGCATAT CCCATAGACT GATAGACTTA AAAGCTCAAA GACTTTGAAC TCAAGGGAAA
  ATGAGCAGTG ATCCAGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50605107	NES14040975	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38092814					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605107	NES14040975	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92090571 () rs orientation: forward

Symbol	Name	Function Class
B130011D17Rik	RIKEN cDNA B130011D17 gene	1726 bp upstream
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	371 bp distal
Rr191071	regulatory region 191071	1972 bp distal
Rr191072	regulatory region 191072	within coordinates
Tssr78731	transcription start site region 78731	677 bp downstream