rs38093736 SNP Detail

Summary

• ID
  rs38093736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:54494841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT CCTGACAAAG CCATTGGCCA
  R
  TTGTGTATCC TCTGCAAACT ATTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss52018424	NES15031925	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		G	A	A
ss322965092	CHEV_9_54435364	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs38093736					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52018424	NES15031925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54494841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	412 bp distal
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	Intron
Rr401372	regulatory region 401372	1109 bp downstream
Rr679159	regulatory region 679159	1036 bp distal
Rr679160	regulatory region 679160	161 bp distal
Tssr85161	transcription start site region 85161	1045 bp downstream
Tssr85162	transcription start site region 85162	507 bp downstream