rs38094382 SNP Detail

Summary

• ID
  rs38094382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12767710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACTCCT TAGCTCTCTT
  GGTCTCCCAG TTTGCTACTT GACTTGGCAA CATTTGGCTG TCGTGATGGC TAGCTTTCTG
  GAAGCTCACT TGTACTATCT GTGAAGAGGT CCTCCCTGAC ACCCCAAATT GGGAAATTAC
  TGTTAACCCT TCATGATAGT TTGCTCAAAG CACTGTTTCA CTGTTATCCT TAAAACAATG
  R
  CTGAGACGGC ACCTTGCTTC GTGTCCCATA TCACTTGACA CTTACCATCT GGCCTTGCTT
  TGCCATCTTT TTGATGTCCG CAATGATTTT CTTTTCCTGG GTTTCTAGTT TCTGTCGTTC
  CCTGTCCAGT TCTCTCATGG CTCGGTTCAG GGCCCTCTGG TTTTGCCGAA GTAGTTCCTC
  TGGCGTCTTC CGGCGCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51468885	NES13983762	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38094382					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51468885	NES13983762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12767710 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	within coordinates
Cpgi18334	CpG island 18334	458 bp proximal
Rr368233	regulatory region 368233	860 bp upstream
Tssr64534	transcription start site region 64534	1081 bp upstream
Tssr70642	transcription start site region 70642	169 bp downstream
Tssr70643	transcription start site region 70643	236 bp downstream
Tssr70644	transcription start site region 70644	340 bp downstream
Tssr70645	transcription start site region 70645	618 bp downstream
Tssr70646	transcription start site region 70646	821 bp downstream
Tssr70647	transcription start site region 70647	920 bp downstream
Tssr70648	transcription start site region 70648	939 bp downstream
Tssr70649	transcription start site region 70649	1670 bp downstream
Tssr70650	transcription start site region 70650	1689 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	1337 bp downstream