rs38095542 SNP Detail

Summary

• ID
  rs38095542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89021649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAGGTT TCTCTGTGTA
  GTCCTGGCTG TCCTGGAACT CACTTTGTAG ACCAGGCTGG CCCCAAACTC AGAAATCCGC
  CTGCCTCTGC CTCCCGAGTG CTGGGATTAA AGGCGTGTGC CACCATGCCC GGCTGGGGAA
  GCACATCTTA AATCTGGGGT ACTCAGAACT GATGAGCCCT AAGATTGCCA CGAGATGACT
  R
  GGATTATACA ATACAGAATA GGAGGGAAGG CTGGTGTATC AGTTACTTTC TAGCACTGTG
  ATCAAACATC ATGACCAAAG CGATTTATGG AAAAGTTCAT TTTGGCTTAC AGTTCCAGAG
  AAAGTCTAAA ATAGCAGGAA AGTTCAGACA GCAGACCACG GGAGCAGGAA TCTGAGAGAT
  CACATAATTA GCCACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51760672	NES14794667	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38095542					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760672	NES14794667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89021649 () rs orientation: forward

Symbol	Name	Function Class
D6Mit248	DNA segment, Chr 6, Massachusetts Institute of Technology 248	867 bp distal
Gm66902	predicted gene, 66902	within coordinates
Rr634071	regulatory region 634071	1327 bp distal