rs38097940 SNP Detail

Summary

• ID
  rs38097940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83482809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTGATC TGGTCATGGC
  TGTATCCGTA GGGTCAAGGA ACAGTGCCAG CACAGAGAAG ACACTCAAAG GGCGATTTGC
  TGAATGAATA AAACGAGAAA CTATTTGCTG CTAGAATGTC TTGAGCAGCC CACACCTGAT
  AGCATTATCA GCATCTGTGC AGAGCTAAGT ACCCTCAGAA TTCAGCAACA GTGAGTTGAG
  Y
  CATTTTCCTT CCATGTTGCT TTTTTGTTTT TTAAGATACT GGGTTACTTA TAACAAAATA
  TATAATAAGT ATCTATTTCT AAATTTAAGA AGCATGATCC TTCCTAACCA GGCAGGCAAC
  TTTCTGTGAG TTTGAGCCCA GCTTGGTCTA AATAGCAAGA TCCAAGCCAG CTAGGGCTAC
  ACAGTGACTG TTTCAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354503	NES13746148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38097940					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354503	NES13746148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83482809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	675 bp proximal
Dguok	deoxyguanosine kinase	within coordinates
Rr399724	regulatory region 399724	1050 bp upstream
Tssr1908	transcription start site region 1908	1254 bp upstream
Tssr61663	transcription start site region 61663	429 bp downstream
Tssr61664	transcription start site region 61664	989 bp downstream
Tssr61665	transcription start site region 61665	1003 bp downstream
Tssr61666	transcription start site region 61666	1011 bp downstream
Tssr61667	transcription start site region 61667	1038 bp downstream
Tssr61668	transcription start site region 61668	1062 bp downstream
Tssr61669	transcription start site region 61669	1068 bp downstream