rs38098992 SNP Detail

Summary

• ID
  rs38098992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:141064420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTTTTC AATATGTTTT
  ATTGACTGAA TTTTGAGACT ATATGAATTA GAATGTACAT GAAATAGCTA TTTAGAATCA
  TAAAACATTC TGTGGATTTA AAATGAGATT TATTGACATG TAGCATGGTG ATTGTTGAGC
  CAATGTTTTA AAAGATGTAG TAAAAATTTA GCCAATTTCA AGGTCTTTCA AAAGATGAGT
  R
  CCTTAATTAA GACTGCTACT GCCATGATAA AGCACCATGA CTAAAGAGAC TGGGGAGACA
  ATTGTCTCTT TGGCTTCTGC TGCATCATCA GTGTTCATAA TTGAAGAAAA TCAGGAAAGA
  ATCTCAAACA GGGCATCAAC CTGGAAGCAG GAGTTAATGC AGTGATCACA GAGGGGTTCT
  GTTTACCAGC TCACTCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51387608	NES14466476	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38098992					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51387608	NES14466476	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:141064420 () rs orientation: forward

Symbol	Name	Function Class
Rr419889	regulatory region 419889	476 bp proximal