rs38099987 SNP Detail

Summary

• ID
  rs38099987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:48591039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGGTTC AAGCACACCC
  CTTTCTTAGC TGTAGGACCT GCAGGGACCT GGGATGTCCA CATTCCTCTC TACTCTTCAG
  TGGGCAGATG GAGAAGAGCT CTGCCCAGGG TCGTCTTCCT GGTTGGATGT CAAAGCCAAG
  TTTAATCAGG CCAGGCATTA AACATGGGGG TCTCTGGGTT ACTTTAATTG GCAGCATGTC
  M
  ATCACGGACA GTGATCTCTT CTCATCGAAT AAACCTCAGA TTCAAGCCAG ACTGGATACT
  TGGTACCAAA TGTTTCCTAT GTCCAGATTT CAGTGCAGGT CAGGGGACAG TCCTGTAAAT
  CAATTCAACT CATTAGACTT GGGCATTCAA GTCCTGACAA TATATAATTG AAGTCACTAC
  TTTCCTCCTA AAGCATGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51306559	NES13769692	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38099987					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51306559	NES13769692	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48591039 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	Intron
Gm45021	predicted gene 45021	855 bp downstream
Gm67224	predicted gene, 67224	299 bp upstream
Tssr60741	transcription start site region 60741	364 bp upstream
Tssr60742	transcription start site region 60742	323 bp upstream
Zfp775	zinc finger protein 775	Intron