rs38100465 SNP Detail

Summary

• ID
  rs38100465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16728893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCACTC CACACCCACC
  CCAACCCCGC AAAAGAACCA AGGAGCTGAG AGTGAGGAGA GTCCCGCAGA TGGTCACTCC
  TCCACTTCGG CTGGTTGTAG GTACCTATGA CAGCAGCAAT GGCAGCGACA GTGAGTTGAG
  TGACTTCGAT ACCTCCAAAG TCAAAGGCAA CAGGAGCTCC TCCGGGAGGA CCAGGAAGGT
  R
  CGCAAAATGC CGGTCAGTTA CTTGGGCAGC AAATTCCTGG GCAGCGATGT GGAGAGTGAG
  GATGATCAGG AGCTGGTGGA GGCCTTCCTC CGCCGTGGGG AGAAGCCCAG CGCGCCTCCT
  CCACGACGCC GAGTCAATCT TCCAGTGCCC ATGTTTGAGA ACAACCTGGG GCCCCAGCCA
  TCCAAGGCCG ACAGATGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51882077	NES14903384	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38100465					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882077	NES14903384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16728893 () rs orientation: forward

Symbol	Name	Function Class
Ccdc8	coiled-coil domain containing 8	within coordinates
Cpgi18410	CpG island 18410	within coordinates
Tssr64672	transcription start site region 64672	1156 bp downstream
Tssr64673	transcription start site region 64673	1042 bp downstream
Tssr64674	transcription start site region 64674	929 bp downstream