rs38100853 SNP Detail

Summary

• ID
  rs38100853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACAAAATG GCGTCCTGAA
  CAGTTGGACT GATCAGGACA GCAAAGACAG CACCTACAGC ATGAGCAGCA CCCTCACGTT
  GACCAAGGAC GAGTATGAAC GACATAACAG CTATACCTGT GAGGCCACTC ACAAGACATC
  AACTTCACCC ATTGTCAAGA GCTTCAACAG GAATGAGTGT TAGAGACAAA GGTCCTGAGA
  Y
  GCCACCACCA GCTCCCCAGC TCCATCCTAT CTTCCCTTCT AAGGTCTTGG AGGCTTCCCC
  ACAAGCGACC TACCACTGTT GCGGTGCTCC AAACCTCCTC CCCACCTCCT TCTCCTCCTC
  CTCCCTTTCC TTGGCTTTTA TCATGCTAAT ATTTGCAGAA AATATTCAAT AAAGTGAGTC
  TTTGCACTTG AGATCTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676647	NES14820451	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38100853					SNP	C	C	T	C	C	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676647	NES14820451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703759 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	within coordinates
Igk	immunoglobulin kappa chain complex	21 bp downstream
Igkc	immunoglobulin kappa constant	21 bp downstream
Rr158	regulatory region 158	824 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1340 bp downstream
Rr399685	regulatory region 399685	928 bp downstream
Rr399686	regulatory region 399686	within coordinates
Tssr1880	transcription start site region 1880	75 bp upstream
Tssr56956	transcription start site region 56956	942 bp downstream
Tssr56957	transcription start site region 56957	303 bp downstream
Tssr56958	transcription start site region 56958	287 bp downstream
Tssr56959	transcription start site region 56959	269 bp downstream
Tssr56960	transcription start site region 56960	254 bp downstream
Tssr56961	transcription start site region 56961	238 bp downstream
Tssr56962	transcription start site region 56962	226 bp downstream
Tssr56963	transcription start site region 56963	179 bp downstream
Tssr56964	transcription start site region 56964	168 bp downstream
Tssr56965	transcription start site region 56965	156 bp downstream
Tssr56966	transcription start site region 56966	148 bp downstream
Tssr56967	transcription start site region 56967	128 bp downstream
Tssr56968	transcription start site region 56968	98 bp downstream
Tssr56969	transcription start site region 56969	74 bp downstream
Tssr56970	transcription start site region 56970	55 bp downstream
Tssr56971	transcription start site region 56971	43 bp downstream
Tssr56972	transcription start site region 56972	within coordinates
Tssr56973	transcription start site region 56973	18 bp upstream
Tssr56974	transcription start site region 56974	50 bp upstream
Tssr56975	transcription start site region 56975	83 bp upstream
Tssr61321	transcription start site region 61321	266 bp upstream
Tssr61322	transcription start site region 61322	118 bp upstream
Tssr61323	transcription start site region 61323	37 bp upstream
Tssr61324	transcription start site region 61324	within coordinates
Tssr61325	transcription start site region 61325	43 bp downstream
Tssr61326	transcription start site region 61326	78 bp downstream
Tssr61327	transcription start site region 61327	92 bp downstream
Tssr61328	transcription start site region 61328	183 bp downstream