rs38104213 SNP Detail

Summary

• ID
  rs38104213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110230573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTATAG CACATAGACT
  CGCCTCTGGC TGTAGGAAGC ATCAGTCCCA TCCAGTTCCG TGTCCTATTT GATCTTAACA
  ATTTCCTGGA GCACCCAGCC CCAGTAGATC ATAAATGCAG CACAGACCAT CCTGGCCACA
  AGGACTTCTT GCTAAGTATT CGCATGGAAC TTTGCCAGGC ACTGAAGAGG CACAGGGCAC
  R
  CATGAAAGAG GAAACGATCA GAAGTTTCAA TCCTGCAACT GCTGTGCCAG TGGGTTGGGG
  GGGGGGGGGT CTGAAGGGGT TGCGGAAACT GCGAAGAGCA GAGACCACCT TGGCCTCACC
  GACAGAGGCT CAAAGCCACT CACTCGAGTT CTTTCTTTAA GCCAAGGTTT GTCCCGTAGC
  CACAGAGCCC TTCAGCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50455945	NES14118515	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		A	A	G	A		G
ss322397540	CHEV_7_117774880	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38104213					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455945	NES14118515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110230573 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	1546 bp downstream
Cpgi19578	CpG island 19578	563 bp distal
Gm28863	predicted gene 28863	469 bp upstream
Gm72687	predicted gene, 72687	1144 bp upstream
Rr400547	regulatory region 400547	858 bp downstream
Rr653271	regulatory region 653271	1155 bp distal
Rr653272	regulatory region 653272	654 bp distal
Rr653273	regulatory region 653273	1000 bp distal
Rr653274	regulatory region 653274	347 bp proximal
Tssr68502	transcription start site region 68502	1835 bp downstream