rs38104358 SNP Detail

Summary

• ID
  rs38104358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88531839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACTGCC AGCACAGGGC
  TGGACAGCTA CGGCTAAACT ATAGGGTCAC TCCTTTCTGT GCTCTGAGTG CGTTTTGTGG
  TTGTGTGGTT GGCACATTAC GGCTTGGCGT AAAGCACTGT TTAGAAACTA AATAAATAAA
  AAATAAAAAA GTGGAAATAC TAAAGGTGTA GTTTTCTTCC CTCTGCAAGG CTGTCAGGCA
  R
  GTTTCCAGCA GAGCTGGGCC AAAGGACCAG AATCAGGAAC GCTGTCTGGG AGCTACCCAC
  CATCACGGTA TGGTATCTAG GCACATCCTC ATCACACATC AGAGGGAAAG AGTGCTTCCC
  CTGCCACTAG AGGAATGAGA CTGTGTGCTG CGTGCGTGCG ACTGTGGCCA TCAGTTCGTA
  CTCAGTGGGA CCCCAGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50598721	NES14052526	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38104358					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598721	NES14052526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88531839 () rs orientation: forward

Symbol	Name	Function Class
Tssr82324	transcription start site region 82324	809 bp upstream
Tssr82325	transcription start site region 82325	748 bp upstream
Zfp423	zinc finger protein 423	within coordinates