rs38105738 SNP Detail

Summary

• ID
  rs38105738
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:28905916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCTAAC CCTAGAGACT
  TGAGGCCCCA GGAAGTGGGG AAGCCTGAAG GGGTCTGAAA TGTAGGTGCA GGAGTATGGG
  GACATCCTCT TGAAGACAGG GGTAGAGGAA TGGGATGAAG AACTATCAGA GGGCAGAACG
  GGAACAGGAT AATGATTGAA CTGTTAGAAA AAAAAAAGAG TAAAGATTAA AAAAATACCC
  M
  TGTACAGACT TACCAATTTA AGTTAAGAAC AGGTGGACAA ATGGGCATCT CAAAACCATA
  TTTGAAATAT TAGGCATAAA AATTATTGAA AACATCAAAC CACCAAATGG TTAAATAAAC
  AAAACAAAAT AACTCATTAG AATCTTATAT GACAGGTTAA CAGCGCTCAG GACTCGGCGT
  GCGCGTGCCT TCCAACTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50836137	NES14188917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38105738					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50836137	NES14188917	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:28905916 () rs orientation: forward

Symbol	Name	Function Class
Gm9824	predicted pseudogene 9824	208 bp upstream
Gm68174	predicted gene, 68174	179 bp upstream
Rr429457	regulatory region 429457	89 bp proximal
Rr429458	regulatory region 429458	190 bp proximal
Tssr92858	transcription start site region 92858	149 bp upstream
Tssr92859	transcription start site region 92859	817 bp upstream