rs38105939 SNP Detail

Summary

• ID
  rs38105939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25777974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCTTCT TCCTATGCCA
  GTCTCTGTGT CTCTTTTCAT TAAGACTCTT GTCTAAGACT GCTGCTGGTG TGTGACCTTG
  TGTGCCCTGG CCACAATGGC AGGAGACACT AGGAACCTTA ATGGCGATCT GACAGTCACC
  TGTTGAATGT AGCCATAACA AAGGAGGATG AGGCTTGACT CTGTGCTTTT GTGGTTTTCT
  W
  GTCAGATATC CTGATTGGAT TTTAGAATGT CTATGGCAGT TGGACCATGT AAAATGCCCT
  GGACTGAAAA GCCTTATTGT GGGAGTTTGT AACAGACTGC CAGTAGAAAG GAAACAGATG
  TTGCCCCAAA AGGCAGGCCC TGACCTTTTT TTCCTATTCT TTTCCTCTGA CACTTGTCCC
  CCTTGTGGAC AGGTCTTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51610561	NES14603633	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs38105939					SNP	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51610561	NES14603633	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25777974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6971	CpG island 6971	1986 bp proximal
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	1491 bp downstream
Tssr130836	transcription start site region 130836	231 bp upstream