rs38106470 SNP Detail

Summary

• ID
  rs38106470
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24684658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGGGG GTTCCTGACC
  AAAAAAAAAA AAAAAAAAAA AAGCCGGCTC TTGCGTGGAA AAACCGGCCT ATTTTATAGT
  CCTTTTCAGA CATATTAAGA CTGTTAATTG TGATAGAAAA ATTAAACTGG CTTCTTGTGA
  AGTCTCAGAG TCTTTGATTC CAAGCGCAGG CTTGGGTGTT ATATACCACC GTGGATCCCG
  M
  ATCTTAACCC TTACTTGTCC TTGAATTTGT TTTCATTCAA ACAAACAAAT TTGTACAGCA
  TTCATACTAT CTAAGTGATG TCGAGATTCC AAGAAACTGG GGAAAGCGAA TACAAACACA
  AGCCGGTAGT GAGAATTCAC TACCTTTAAT TGATGGTGAA GCCTCCAAAG AAAACTTGAG
  AGGAAAAGAA AAAAAAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50654675	NES14025675	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38106470					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50654675	NES14025675	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24684658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	337 bp proximal
Rr675417	regulatory region 675417	912 bp proximal
Rr675418	regulatory region 675418	1919 bp proximal
Tbx20	T-box 20	within coordinates
Tssr88515	transcription start site region 88515	180 bp upstream
Tssr88516	transcription start site region 88516	914 bp downstream