rs38108435 SNP Detail

Summary

• ID
  rs38108435
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83080979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGGCAACA TAATATTTAC CCCATAAACG CAAGCTCAGA
  GACAGGGAGG GCACACTTCT GAGCATGGGA CTGGTGGCCT GTCACTCCCT GTCTCTCACA
  M
  ACAGAGTCAT GCTCCTCCCT CCAGCTACAA TAAGGAACTG CTATCAAACT GGAAAACCAA
  CACATCGGCT TCCAAAACAC ATGGCCTCCA TGGTCCCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971193	NES14983398	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C		A	C	C	A		C
ss145303274	ENSMUSSNP5821546	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss322735748	CHEV_8_84878249	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38108435					SNP	C	C	C	C	C	C	C	C	A	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971193	NES14983398	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83080979 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Tssr81943	transcription start site region 81943	928 bp upstream
Tssr81944	transcription start site region 81944	870 bp upstream
Tssr81945	transcription start site region 81945	819 bp upstream
Tssr81946	transcription start site region 81946	766 bp upstream
Tssr81947	transcription start site region 81947	3 bp upstream
Tssr81948	transcription start site region 81948	1815 bp downstream