rs38108709 SNP Detail

Summary

• ID
  rs38108709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130414717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CCACCTTTGC TGATTTCTCC
  Y
  AGTGACTTCT TTTTAAACCC GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51851744	NES14692037	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	T
ss144481299	ENSMUSSNP3152741	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38108709					SNP	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51851744	NES14692037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130414717 () rs orientation: forward

Symbol	Name	Function Class
A330070K13Rik	RIKEN cDNA A330070K13 gene	1245 bp upstream
Caln1	calneuron 1	within coordinates
Rr621523	regulatory region 621523	1240 bp distal
Rr621524	regulatory region 621524	990 bp distal
Tssr49063	transcription start site region 49063	1288 bp downstream
Tssr49064	transcription start site region 49064	1159 bp downstream
Tssr49065	transcription start site region 49065	1116 bp downstream