rs38109052 SNP Detail

Summary

• ID
  rs38109052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149151368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAATGT TGTCATTACG
  AGCTGGTTAA TCATAGTGAG AAATAGAGCC AGCTTAGTCC GAATGACACC TGCTCTGATT
  TCTGTGGACA TTTTATGAAT CTTCTTATAT TGTCAGTAGG ATTTTAGAGA GTATAACAGA
  AATATTTTAC TAGTATCCAG GTAAACAAAT TTAGACAAAG TACCAGTTTT GAATAAGATT
  R
  GTGCTTTAAT TTGAATGGAG TAGCTGACAA GGGAAGAACA TAATTTGCTG AAAGAAATAT
  TGATTTGAAT GGGAACTGAT CCCTGGCAAC TTTTAACATT ACTTGCATGT ATTCCAATGC
  AAATAGAAAA TGATAATCTA ATATTTATGA ATAATTGATT GTCTGAAAGA ACTCAAATCT
  GCTGCTGAAA AGAGGTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052118	NES13892924	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A		G	A	A	G		A
ss136071455	ENSMUSSNP5815491	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321019006	CHEV_3_149108695	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38109052					SNP	G	G	A	A	A	G	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052118	NES13892924	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149151368 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	230 bp upstream
Rr398127	regulatory region 398127	within coordinates
Rr587324	regulatory region 587324	630 bp distal
Rr587325	regulatory region 587325	96 bp distal
Tssr36100	transcription start site region 36100	487 bp upstream
Tssr36101	transcription start site region 36101	466 bp upstream
Tssr36102	transcription start site region 36102	453 bp upstream
Tssr36103	transcription start site region 36103	362 bp upstream
Tssr36104	transcription start site region 36104	314 bp upstream
Tssr36105	transcription start site region 36105	236 bp upstream