rs38109501 SNP Detail

Summary

• ID
  rs38109501
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188712394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATCCTC AGATCTCAGG
  CCAGTAGTGA AGTACAGGAG ATACAGGTAA GGCATTTAGC CAGTCTTGTG GGAAATGGCC
  CTCTGGTTTC ACTAAGCTTA GCAGGATGGA GAAGACAAAG AACTAAAGCC ATCATGAATG
  ATTCAAGTGG TGATGACAGA ACCCTGTTCA AACAACTCCT GCAAAGCCCC ATTTCAGACC
  S
  TAGGATGCAT ACCACAGAAA AAGCACATGG CTGCACTTAT GCCAAGAGCC ACCAGGGGGC
  AGAAGGGCCG AGAACACAGA ACACTGTTGA CGGGTGCTTT AACCTGGGCC TTTAAATCCA
  GACCCACAGC ATACAGCATT TCCTAGCACT GTTGGGAGAA CACACAGCTA CTGCTGTGGA
  ACTCAGCTTC TAGGAGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51420028	NES14449519	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38109501					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51420028	NES14449519	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188712394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			1722 bp distal
Rr425734	regulatory region 425734			within coordinates
Rr425735	regulatory region 425735			45 bp proximal
Tssr15705	transcription start site region 15705			1770 bp upstream