gaaAAAAAA ACCACATGAG TATTTGTGGA AAAGATGCAG AACAAGTTAT TCCTGCCTGG TCACGTCTCT TCTCTAGGAC AGAGGATTAC ACTGTCAGTG GTGGGAGGGG ACGTTGGGAA AGTGCTAGGA GCAGATAAAG GCGTGGGTGG Y AGCCTTAGCA GTGACCATTG AGCATGGTGG AGCTGCCAGG CAAGAAGGAG AGCGCACAGC CAGGATGTCT GGCGTTCTGT GTTCCTCTCT CCTAGGAACG GACATGGATA GGAACATCTG GAAGAGTAGG AGAAGACGCG GGCGAAGCCG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51033511 | NES14395136 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | T | C | C | C | ||
ss324113676 | CHEV_12_84866998 | CHEVERUD | SCREENING_POP | f | SNP | C | T | ||||||||||
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs38109649 | SNP | C | C | C | C | C | C | T | C | C | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51033511 | NES14395136 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr12:83572822 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Dcaf4 | DDB1 and CUL4 associated factor 4 | within coordinates | ||||||
Rr257993 | regulatory region 257993 | 1422 bp distal | ||||||
Rr261746 | regulatory region 261746 | 1179 bp proximal | ||||||
Rr265648 | regulatory region 265648 | within coordinates | ||||||
Rr268609 | regulatory region 268609 | 1780 bp proximal | ||||||
Rr387528 | regulatory region 387528 | 877 bp upstream | ||||||
Tssr114259 | transcription start site region 114259 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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