rs38109649 SNP Detail

Summary

• ID
  rs38109649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83572822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaaAAAAAA ACCACATGAG TATTTGTGGA
  AAAGATGCAG AACAAGTTAT TCCTGCCTGG TCACGTCTCT TCTCTAGGAC AGAGGATTAC
  ACTGTCAGTG GTGGGAGGGG ACGTTGGGAA AGTGCTAGGA GCAGATAAAG GCGTGGGTGG
  Y
  AGCCTTAGCA GTGACCATTG AGCATGGTGG AGCTGCCAGG CAAGAAGGAG AGCGCACAGC
  CAGGATGTCT GGCGTTCTGT GTTCCTCTCT CCTAGGAACG GACATGGATA GGAACATCTG
  GAAGAGTAGG AGAAGACGCG GGCGAAGCCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51033511	NES14395136	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T		C	C		C
ss324113676	CHEV_12_84866998	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38109649					SNP	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51033511	NES14395136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83572822 () rs orientation: forward

Symbol	Name	Function Class
Dcaf4	DDB1 and CUL4 associated factor 4	within coordinates
Rr257993	regulatory region 257993	1422 bp distal
Rr261746	regulatory region 261746	1179 bp proximal
Rr265648	regulatory region 265648	within coordinates
Rr268609	regulatory region 268609	1780 bp proximal
Rr387528	regulatory region 387528	877 bp upstream
Tssr114259	transcription start site region 114259	within coordinates