rs38110002 SNP Detail

Summary

• ID
  rs38110002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25189944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACATAT TCACAAATGT
  CCACTACCAC TTCAGCCCCA TGGCAGAGCC AGGGGCTCTG AGAAGCCCCA CACACATCTC
  CCATCACCTT AAAAACAAAC AAACAAACAA ACAAACAAAC AAAACAGCTC CCAAGAACAA
  GGAAGGCTAC AGTGCACCCA CTGTGTGCAG ACAGCTGTTC AGGGGGACAC AGACTCATTC
  Y
  ACCACAGGAA ATGCCATCAA CAAGTCTCAG ATACGACAGG CAGACAGCCA CAATTCGGAC
  TCCGTAGGGA CAGGTCCCAA TTCTTTCCTG CACAACCCCT TCCAGAACAA TCTTCAAGCA
  TTTTGAAATG TTTTTGAACT TTCATGATTC GGACAACGTG ATCGAATGCA TCGAGAGCCA
  TTGCTATCCC AGGGAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51082746	NES13879770	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38110002					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082746	NES13879770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25189944 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			896 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			1982 bp distal
Rr608457	regulatory region 608457			937 bp distal
Rr608458	regulatory region 608458			1329 bp distal
Rr608459	regulatory region 608459			1192 bp distal
Rr608460	regulatory region 608460			372 bp proximal
Rr608461	regulatory region 608461			924 bp proximal
Tssr45452	transcription start site region 45452			894 bp upstream