rs38110272 SNP Detail

Summary

• ID
  rs38110272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70705371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGAAATA GCCATGTATA
  AAATGAGATA GAAGAGACCT TCATCAACAG GTCAAAGAAT ATAGGTAATT TTGTCTGGGT
  ATGAAGAGCC CACGTATCAA AGGTTACATT AGGGAAGGAA GAGGACACTA ACAGTGACTT
  TCATTCTCCC CCTCTTCCTG GAGGCCCCTG CATTTAGTCC CTCGTGGGCT CATCCACTCA
  R
  CACACATTTA CTAAGCATCT TCTCAGCCTA CACTCTGAAG GCAGTGCAGA ATAATGTTAG
  TGTCCCTTCC CCCAGTTAAT ATGCAGTCCA GTTTCCCTGC TCCTTCCCTT TCTCAGTCCA
  CATAAGGATG ATGGGAAAGG ACAGTCACCA AATAGGAGAG GGCAACCCTT TGCCTTCCTA
  CCTCTTGAGA ATGTACATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676596	NES14820366	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	A		A	A	G	A		G
ss321815822	CHEV_6_70678381	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38110272					SNP	G	G	A	G	G	G	A	G	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676596	NES14820366	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70705371 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	826 bp upstream
Gm68839	predicted gene, 68839	1421 bp upstream
Igk	immunoglobulin kappa chain complex	1633 bp downstream
Igkc	immunoglobulin kappa constant	1633 bp downstream
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1576 bp downstream
Tssr1880	transcription start site region 1880	1536 bp downstream
Tssr56957	transcription start site region 56957	1915 bp downstream
Tssr56958	transcription start site region 56958	1899 bp downstream
Tssr56959	transcription start site region 56959	1881 bp downstream
Tssr56960	transcription start site region 56960	1866 bp downstream
Tssr56961	transcription start site region 56961	1850 bp downstream
Tssr56962	transcription start site region 56962	1838 bp downstream
Tssr56963	transcription start site region 56963	1791 bp downstream
Tssr56964	transcription start site region 56964	1780 bp downstream
Tssr56965	transcription start site region 56965	1768 bp downstream
Tssr56966	transcription start site region 56966	1760 bp downstream
Tssr56967	transcription start site region 56967	1740 bp downstream
Tssr56968	transcription start site region 56968	1710 bp downstream
Tssr56969	transcription start site region 56969	1686 bp downstream
Tssr56970	transcription start site region 56970	1667 bp downstream
Tssr56971	transcription start site region 56971	1655 bp downstream
Tssr56972	transcription start site region 56972	1596 bp downstream
Tssr56973	transcription start site region 56973	1585 bp downstream
Tssr56974	transcription start site region 56974	1555 bp downstream
Tssr56975	transcription start site region 56975	1518 bp downstream
Tssr61321	transcription start site region 61321	1878 bp upstream
Tssr61322	transcription start site region 61322	1730 bp upstream
Tssr61323	transcription start site region 61323	1649 bp upstream
Tssr61324	transcription start site region 61324	1572 bp upstream
Tssr61325	transcription start site region 61325	1539 bp upstream
Tssr61326	transcription start site region 61326	1526 bp upstream
Tssr61327	transcription start site region 61327	1500 bp upstream
Tssr61328	transcription start site region 61328	1422 bp upstream