rs38112583 SNP Detail

Summary

• ID
  rs38112583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95972426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAGGAA TGGCAGCCTG
  GCCAATGGAG CAGGATCCTG CCCCAAATAC AAATCAAATA TGACAAACTT AAAAGCTTGA
  GGCTAGGCTC CGTGATAGAG CATCCACCTA GTGTGTGCAA GACGCTGGGT ACTAAAGAAA
  GAAAACAAAA ATATCCCCAA ACCTAATGTA TTTAGCTCCT TATAGGGGCA GATGACAGGC
  R
  AAGGAGGACT TGTGACACTT TCCTGAGCAT ACAGTTTTGT GCTTCAGGAG TACTGTTAAC
  ATTTTATATT CTCAAAAATT AAAACAAATC AACAACAACA AAAACAGCAA CAACAAAAAC
  CCAATCTTGC TAGCCGTGGC AGAACACACC TGAGATTGCC CTCAAGAAGC TGAGACCGGA
  AGTTCACTAA GCTAAGCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51973414	NES14990771	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38112583					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973414	NES14990771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95972426 () rs orientation: forward

Symbol	Name	Function Class
Cngb1	cyclic nucleotide gated channel beta 1	within coordinates
Rr368590	regulatory region 368590	277 bp downstream
Rr368591	regulatory region 368591	1625 bp upstream
Rr668196	regulatory region 668196	1574 bp distal
Rr668197	regulatory region 668197	within coordinates
Rr668198	regulatory region 668198	1603 bp proximal