rs38112960 SNP Detail

Summary

• ID
  rs38112960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95724116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTACCCA CAGGTCTTCT
  GCTGGGCTGG CGCTCAATGC CCACAGCTCC CCTCCCTCAG TTTCCCCATG GGGCAGGGCT
  TGGCAGAGGG TATTGCAGCT CATGGATGTT GGCAGGAAAT CACAAGAAGG TGAGACCTGT
  GCTAGCTGAG TAGTCCTATA TAGCAAGGCT GGGTCTAGAT GGTCCTACCT ACAGCCATGC
  Y
  CAGTGTGGTA GCTCAGGCCT ATAAACCTGG TGCCTGACAG ACTGAGGCAG GGGGATTGCT
  ATGAGTTCAA GGCCAGCCTG GGCCAAGTGC GAGACAAACA AAAACAAACA AACAAACAAA
  CAACACAGAA AGTGAGCCTT GCCTTAGTGG GTAAGACCTG GGAACCTGCC AGCCTCTAGG
  ACAGGTGCCA ACTTGATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss51973964	NES14993110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	C
ss322809846	CHEV_8_97521388	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs38112960					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973964	NES14993110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95724116 () rs orientation: forward

Symbol	Name	Function Class
Adgrg1	adhesion G protein-coupled receptor G1	within coordinates
Tssr78951	transcription start site region 78951	1867 bp downstream
Tssr78952	transcription start site region 78952	1794 bp downstream
Tssr78953	transcription start site region 78953	1740 bp downstream
Tssr78954	transcription start site region 78954	1727 bp downstream