rs38112983 SNP Detail

Summary

• ID
  rs38112983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151958077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGACTCA GAACTGTCTG TAACTCCAAG CCCAAGGGAT
  TCAATGCTTT CTGACCTCTG TGGACACTGC ATGCCCATGG CACACGAGCA TATAGGGCAG
  Y
  ACTTAGAAAT GCTGCTATTG AAAAGCCATA ATTGTGCTTT GTAATTATAA TTTATGTGTG
  AAAATGTCCT AAAGCTTTAT AAAACTCTCA AAGATACCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060238	NES13426079	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38112983					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060238	NES13426079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151958077 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	within coordinates
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	430 bp upstream
Tssr32404	transcription start site region 32404	1168 bp upstream
Tssr36193	transcription start site region 36193	388 bp downstream
Tssr36194	transcription start site region 36194	478 bp downstream
Tssr36195	transcription start site region 36195	630 bp downstream
Tssr36196	transcription start site region 36196	644 bp downstream
Tssr36197	transcription start site region 36197	681 bp downstream
Tssr36198	transcription start site region 36198	1240 bp downstream
Tssr36199	transcription start site region 36199	1255 bp downstream
Tssr36200	transcription start site region 36200	1279 bp downstream
Tssr36201	transcription start site region 36201	1315 bp downstream
Tssr36202	transcription start site region 36202	1361 bp downstream