rs38113550 SNP Detail

Summary

• ID
  rs38113550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70118948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTACTACC TTGGGGTGCG
  GTGCGGTGGG CCAGCCCAGG GCATCCTCTC TTGGAAGAGA AGCCCATCAG GCACTGGATA
  GACAGAGAGG AGGCAATGGG AAGGTGAAAG TCGTCCCACC CCCATCTCTG CTGAGGACTC
  CGCAGGTGGA AACTTCAGTG GAGAGTAAAC AAGAAATACA CGTCCGGTCC AAAGAGGAAC
  R
  GCCATGGTTA TTACACTGAC CATATTACCA GGTTCTCTTG TAGACGCGCA TGCAGTCTAG
  AGCCTGTGCT GGACTGCTCA TTTTTATGTA TCCTGATGTC TCTGACAGGC CAAGCACGCT
  CATCTGTGGC TCATCTGCCC GGAGCCACTA TGAGCTCAGT ATGTGTCCGT GAACCACAAT
  ACTTCCTCCC TCTACTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52028009	NES15045335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38113550					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52028009	NES15045335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70118948 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	within coordinates
Myo1e	myosin IE	within coordinates
Rr206678	regulatory region 206678	1747 bp distal
Tssr85881	transcription start site region 85881	1545 bp upstream
Tssr90403	transcription start site region 90403	55 bp downstream