rs38114833 SNP Detail

Summary

• ID
  rs38114833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188737514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACTAAAG AAATTAGCAT
  ATCTGGTGAT GTAGCATACC CACTCTAGTG GCTTGCTACA AAATCTGAAC TATGAAGCTA
  AACATGAAAC TATGAAGTAA AGTGATTTGC TATGAAATAC TAAGATGATA ATGCCTCTAA
  GCCTCAAGTT CATGATCATT TCCTCAGGTC TATTAGTGCA TGAGACTAGT ACTATAGCAA
  Y
  CTTTCATTTC AGGAAACTCA TCAATACAAA GTAACTTGTC CAACTTTGCT AACTAGAGGG
  AAGGCCTGCT ATGTGCAGAA GGAACCAGTT TGTTTCCAAA CCTTTCCCTC AGCCAGTCCC
  TCTCCTTCCT CCATCCCTAC CTGAGTAAGC ATGGACTGGT CACTGATGCT GTCGATCATA
  TTCACTCCCA GTGTGTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419784	NES14449065	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38114833					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419784	NES14449065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188737514 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1193	CpG island 1193			1648 bp proximal
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr372619	regulatory region 372619			within coordinates
Rr425737	regulatory region 425737			943 bp proximal
Rr425738	regulatory region 425738			1588 bp proximal