rs38116168 SNP Detail

Summary

• ID
  rs38116168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51108344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGATTT ATACTTCCGG
  CTAGGCCAAC TTTACCAACC GAGTTGTATT TCCACCCAAT ACAATCATGC TCTGATGCTA
  TTATGTATCC TGAAAATACC CCAGAGGCTT ATGTGCTAAA ATCATGCCAG CCTTGGGCAG
  CTGTTGGGAG GTGGTGAAAC GTTTAGAAAG AAAGATCGCT GAGAGTGTGC CCTTGGCTGA
  Y
  CTTTGAAAGT CAGGCCCCTT CTCTCCCTTT TGCTTCCTTT CATCCACCAT GAAAGTAAAC
  AGTTTCGTCT GTCGCCACCC CACTCAATCC CACTCCACCC CATCCGTGAA CTGCTTTGCC
  ACAGGCCAAA GCAAGAGGGT CAAGAGATCC TTGACTGAAA ACCTCTGAAA ATATGATTCA
  GAATGGTGGC ACACACATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51512144	NES14632185	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38116168					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51512144	NES14632185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51108344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	399 bp distal
Gm26782	predicted gene, 26782	within coordinates
Rr404075	regulatory region 404075	72 bp downstream
Rr491714	regulatory region 491714	514 bp distal
Rr491715	regulatory region 491715	338 bp distal
Rr491716	regulatory region 491716	within coordinates
Rr491717	regulatory region 491717	594 bp proximal
Tep1	telomerase associated protein 1	327 bp upstream
Tssr125373	transcription start site region 125373	480 bp downstream
Tssr128379	transcription start site region 128379	1532 bp upstream
Tssr128380	transcription start site region 128380	337 bp upstream
Tssr128381	transcription start site region 128381	316 bp upstream