rs38118021 SNP Detail

Summary

• ID
  rs38118021
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35021608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTCCTT ACCCTCCAGC
  AAGCAGACAC TAATACCTTC CTCTGAGGTC TCTTCCAGGG AAAGAAATGT TTATCTCACT
  TTGCACTGTA ATCCCTTGAG TGTGGCAGAT ACTACTATCT GTACCTCAAC AAACAAGCAG
  GTGTTCTAAT TGAAAGCCAA TCGAAAGCAA GATCTGCCTG AGCTCACTTG GCTGGACAGA
  S
  GACACAGAAG TGGCTCCAGG TCCTGCACAG CTCAATGACC TTCTTCTCCA GGGCCAAAGG
  CAGGTAGACG TCTCCCCTGG GATAAAAGAA GGCCAGCCCG CTTGTACAGT ACTATGTTGG
  AGGCACTGAA TATTATCTGA AGTGCTATCT CATTAAGGAG TGTTAATTTC ATGGAGGTGT
  AAATATTGCT AACAAGGACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50670803	NES14013387	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38118021					SNP	G	G	G	G	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670803	NES14013387	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35021608 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	1392 bp proximal
Rr383192	regulatory region 383192	1032 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates