rs38118488 SNP Detail

Summary

• ID
  rs38118488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49022912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTTCTT AAATTAATTA
  GTTAAAGTTA AAAAAGCATA TTCTCTGTGG GAAATTTGGA AACAGAAGAG CATAAACAAA
  ATATAAAAAT CATTCACAAA CAACATCAGA TGTGATTGCT ATTGAATAAT GACATTTTAA
  GTATTAATAT TTCTTGTTTA AGATAATAAT GGATACACAT TTTTATTTTG TTATCATAGC
  R
  TTTGTCTATA TTATTTAAAA GTCCTTAAGT TGTTTTAATG ACTGCATAAT ACATCAATGT
  GTGGATCTAA AACAACATAG ATACTGTTCT TCTCTGTCAT GGTCTACATG TCTGTTTTCT
  AAAAACCATA AAAGGTTTCA CTTTGATGTA TTATTAGTGA AGTGTTATTT TAAGAGGAAC
  AAAATTGGCT CATTATTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658488	NES14824355	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38118488					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658488	NES14824355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49022912 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	371 bp proximal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	261 bp proximal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56316	transcription start site region 56316	1971 bp downstream
Tssr56317	transcription start site region 56317	1921 bp downstream
Tssr56318	transcription start site region 56318	1865 bp downstream
Tssr56319	transcription start site region 56319	661 bp downstream
Tssr56320	transcription start site region 56320	621 bp downstream
Tssr56321	transcription start site region 56321	607 bp downstream
Tssr56322	transcription start site region 56322	589 bp downstream
Tssr56323	transcription start site region 56323	553 bp downstream
Tssr56324	transcription start site region 56324	523 bp downstream
Tssr56325	transcription start site region 56325	367 bp downstream
Tssr56326	transcription start site region 56326	352 bp downstream
Tssr56327	transcription start site region 56327	298 bp downstream
Tssr56328	transcription start site region 56328	220 bp downstream
Tssr56329	transcription start site region 56329	144 bp downstream
Tssr56330	transcription start site region 56330	20 bp upstream
Tssr56331	transcription start site region 56331	61 bp upstream
Tssr56332	transcription start site region 56332	130 bp upstream
Tssr56333	transcription start site region 56333	172 bp upstream
Tssr56334	transcription start site region 56334	189 bp upstream
Tssr56335	transcription start site region 56335	199 bp upstream
Tssr56336	transcription start site region 56336	229 bp upstream
Tssr56337	transcription start site region 56337	244 bp upstream
Tssr56338	transcription start site region 56338	267 bp upstream
Tssr56339	transcription start site region 56339	280 bp upstream
Tssr56340	transcription start site region 56340	472 bp upstream
Tssr56341	transcription start site region 56341	732 bp upstream
Tssr56342	transcription start site region 56342	764 bp upstream
Tssr56343	transcription start site region 56343	1314 bp upstream
Tssr56344	transcription start site region 56344	1328 bp upstream
Tssr56345	transcription start site region 56345	1346 bp upstream
Tssr56346	transcription start site region 56346	1383 bp upstream
Tssr56347	transcription start site region 56347	1421 bp upstream
Tssr56348	transcription start site region 56348	1447 bp upstream
Tssr56349	transcription start site region 56349	1770 bp upstream
Tssr56350	transcription start site region 56350	1797 bp upstream
Tssr56351	transcription start site region 56351	1827 bp upstream
Tssr56352	transcription start site region 56352	1840 bp upstream
Tssr56353	transcription start site region 56353	1909 bp upstream
Tssr56354	transcription start site region 56354	1924 bp upstream
Tssr56355	transcription start site region 56355	1949 bp upstream
Tssr56356	transcription start site region 56356	1967 bp upstream
Tssr56357	transcription start site region 56357	1979 bp upstream
Tssr56358	transcription start site region 56358	1997 bp upstream
Tssr60845	transcription start site region 60845	1829 bp upstream
Tssr60846	transcription start site region 60846	586 bp upstream
Tssr60847	transcription start site region 60847	503 bp upstream
Tssr60848	transcription start site region 60848	357 bp downstream
Tssr60849	transcription start site region 60849	1351 bp downstream
Tssr60850	transcription start site region 60850	1406 bp downstream
Tssr60851	transcription start site region 60851	1876 bp downstream
Tssr60852	transcription start site region 60852	1919 bp downstream
Tssr60853	transcription start site region 60853	1929 bp downstream
Tssr60854	transcription start site region 60854	1948 bp downstream
Tssr60855	transcription start site region 60855	1981 bp downstream