rs38119601 SNP Detail

Summary

• ID
  rs38119601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123267866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAGTGG TGGCTATTGT
  TGGTCAGCTG TGCACTTTAT GCCAGGCTCT CAGCTTGGAA AAGCTTAAAG TGCCAGAGAA
  AAGGCACTTT TAATGCGAGT ATATTAATTT TTAAGTTAGA TTACTCAGCC CAGTAAATTC
  CATCTATAAT ACAAATTGAA AACACAGCTA AAGGAAGATG TGAACACCCT AACTATGGAA
  Y
  GGTAGGGACA GTAGGGGTGC CTTATGTGTA CTGAAGAGAG GCAGGACGGT GTTGGGGAGA
  GCTAAGAAGT GTAGACTCAT ACCACACATA GTCAATAAAT CTCCTAAAGT GCAAATCAGT
  AATGAATATA AACATTTTTA AATAGTTGAA GTAAGAGTGG AAGCCAAGAG TGCTGGTACA
  TGTGTATAGT CCCAGCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss50808750	NES14203159	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs38119601					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50808750	NES14203159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123267866 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	1735 bp proximal
Rr208064	regulatory region 208064	936 bp proximal