rs38120271 SNP Detail

Summary

• ID
  rs38120271
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74026587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAACTTCC AATAAGTATC
  CTAACTCTAA GCTGGTTTGT AGTTGGGTTT TCGTTTCTTT AGCGATTTTA TTTATGCTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTGCT AGAGATTAGA
  CCTGGGGTCT CCTGCATGCT AAGCAGTCAA CAGACTGAGC CACATAGGCA GCTCCAGAAA
  S
  CTCCCAGTTC TTCTAATAAA AATCTTGCTG CCGGAACAGA AGGGGACTGA GCCATCTCGT
  TTCTTTCTAG CAGAGACAGA AAGCCAGGTC CAGAAAGAGT TGTGACACAC ATCAAGATCA
  CATAAATCAG GGAATGGGAG AGGGAAGGAA AGAAGGAAAG TCTAGACTTT GAAGCATCTC
  CAAACCACAG GTCAGTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276042	NES14516313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38120271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276042	NES14516313	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74026587 () rs orientation: forward

Symbol	Name	Function Class
Rr17341	regulatory region 17341	387 bp distal
Rr27623	regulatory region 27623	411 bp distal
Rr34548	regulatory region 34548	within coordinates
Tns1	tensin 1	within coordinates
Tssr12229	transcription start site region 12229	626 bp upstream